# r4microbiome

**Repository Path**: wangzc1990/r4microbiome

## Basic Information

- **Project Name**: r4microbiome
- **Description**: R packages for microbiome analysis
- **Primary Language**: Unknown
- **License**: Not specified
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2020-11-04
- **Last Updated**: 2020-12-19

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README

# R packages for microbiome analysis

- [vegan](https://github.com/vegandevs/vegan)
- [phyloseq](https://github.com/joey711/phyloseq)
- [MicrobiotaProcess](https://github.com/YuLab-SMU/MicrobiotaProcess) (菌群组成及多样性分析，类似[LEfSe](https://huttenhower.sph.harvard.edu/lefse/)分析及可视化)
- [ microbiomeMarker ](https://github.com/yiluheihei/microbiomeMarker)([LEfSe](https://huttenhower.sph.harvard.edu/lefse/)分析及可视化和类似[stamp](https://beikolab.cs.dal.ca/software/STAMP)软件的统计分析)
- [ microbiomeSeq](https://github.com/umerijaz/microbiomeSeq)
- [microbiome](https://github.com/microbiome/microbiome)
- [MicrobiomeR](https://github.com/vallenderlab/MicrobiomeR)
- [microbiomeutilities](https://github.com/microsud/microbiomeutilities)
- [ampvis2](https://github.com/MadsAlbertsen/ampvis2)