# TopDom

**Repository Path**: hi-c_baseline/TopDom

## Basic Information

- **Project Name**: TopDom
- **Description**: https://github.com/jasminezhoulab/TopDom
- **Primary Language**: Unknown
- **License**: Not specified
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2026-03-12
- **Last Updated**: 2026-03-12

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README

# **TopDom**
**TopDom** is a software tool to ideintify Topological Domains, which are basic builiding blocks of genome structrue. TopDom is computationally very efficient. Using detecting optimal polygon algorithm, TopDom detect topological domains in a linear time. As well as, this tool requires only a single parameter, which enable user to use easily. 

Reslease Note v0.0.2
- Gap Identification module is changed.
- Minor bug related to Change Points identificaiton in very small regions is fixed.
- bed format support
Note : Harris A. Lazaris(NYU School of Medicine), Gangqing Hu, Ph.D.(National Heart, Lung and Blood Institute, NIH)